Application list

Application	Versions	Default
abaqus	2023, 2024	2024
agg	1.4.3	1.4.3
alphafold	2.3.2	2.3.2
annovar	2019Oct24	2019Oct24
ansys	2023R2	2023R2
ant	1.10.14-gcc-12.2.0	1.10.14-gcc-12.2.0
asciinema	2.4.0	2.4.0
aspell	0.60.8-gcc-12.2.0	0.60.8-gcc-12.2.0
aspera	4.18.0	4.18.0
augustus	3.5.0-gcc-12.2.0	3.5.0-gcc-12.2.0
autoconf-archive	2023.02.20-gcc-12.2.0	2023.02.20-gcc-12.2.0
bamtools	2.5.2-gcc-12.2.0	2.5.2-gcc-12.2.0
bamutil	1.0.15-gcc-12.2.0	1.0.15-gcc-12.2.0
bcftools	1.19-gcc-12.2.0	1.19-gcc-12.2.0
bcl2fastq2	2.20.0.422-gcc-12.2.0	2.20.0.422-gcc-12.2.0
bedops	2.4.41-gcc-12.2.0	2.4.41-gcc-12.2.0
bedtools2	2.31.1-gcc-12.2.0	2.31.1-gcc-12.2.0
bismark	0.24.1-gcc-12.2.0	0.24.1-gcc-12.2.0
blast-plus	2.14.1-gcc-12.2.0	2.14.1-gcc-12.2.0
boost	1.85.0-gcc-12.2.0	1.85.0-gcc-12.2.0
bowtie	1.3.1-gcc-12.2.0	1.3.1-gcc-12.2.0
bowtie2	2.5.2-gcc-12.2.0	2.5.2-gcc-12.2.0
bucky	1.4.4-gcc-12.2.0	1.4.4-gcc-12.2.0
bwa	0.7.17-gcc-12.2.0	0.7.17-gcc-12.2.0
canu	2.2-gcc-12.2.0	2.2-gcc-12.2.0
castep	23.1	23.1
cellranger	8.0.1, 9.0.0	9.0.0
cfitsio	4.3.0-gcc-12.2.0	4.3.0-gcc-12.2.0
clustalw	2.1-gcc-12.2.0	2.1-gcc-12.2.0
cmake	3.27.9-gcc-12.2.0	3.27.9-gcc-12.2.0
colmap	3.10	3.10
comsol	6.2, 6.2-eecs	6.2
cp2k	2024.1-openmpi-5.0.3-gcc-12.2.0	2024.1-openmpi-5.0.3-gcc-12.2.0
cp2k-gpu	2024.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0	2024.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0
cst_studio	2024	2024
cuda	10.2.89-gcc-12.2.0, 11.8.0-gcc-12.2.0, 12.2.2-gcc-12.2.0, 12.4.0-gcc-12.2.0	12.4.0-gcc-12.2.0
cudnn	7.6.5.32-10.2-cuda-10.2.89-gcc-12.2.0, 8.9.7.29-11-cuda-11.8.0-gcc-12.2.0, 8.9.7.29-12-cuda-12.4.0-gcc-12.2.0	8.9.7.29-12-cuda-12.4.0-gcc-12.2.0
cufflinks	2.2.1-gcc-12.2.0	2.2.1-gcc-12.2.0
deeplabcut	2.3.9	2.3.9
diamond	2.1.7-gcc-12.2.0	2.1.7-gcc-12.2.0
dl_poly	5.1.0	5.1.0
dua	2.29.2	2.29.2
eigen	3.4.0-gcc-12.2.0	3.4.0-gcc-12.2.0
emacs	29.3-gcc-12.2.0	29.3-gcc-12.2.0
emboss	6.6.0-gcc-12.2.0	6.6.0-gcc-12.2.0
entrezdirect	10.7.20190114-gcc-12.2.0	10.7.20190114-gcc-12.2.0
exonerate	2.4.0-gcc-12.2.0	2.4.0-gcc-12.2.0
fastme	2.1.5.1-gcc-12.2.0	2.1.5.1-gcc-12.2.0
fastqc	0.12.1-gcc-12.2.0	0.12.1-gcc-12.2.0
ffmpeg	6.1.1-gcc-12.2.0	6.1.1-gcc-12.2.0
fltk	1.3.7-gcc-12.2.0	1.3.7-gcc-12.2.0
gatk	4.5.0.0-gcc-12.2.0	4.5.0.0-gcc-12.2.0
gaussian	g16	g16
gcc	12.2.0	12.2.0
gdb	14.1-gcc-12.2.0	14.1-gcc-12.2.0
ghostscript	10.0.0-gcc-12.2.0	10.0.0-gcc-12.2.0
git	2.42.0-gcc-12.2.0	2.42.0-gcc-12.2.0
gmp	6.2.1-gcc-12.2.0	6.2.1-gcc-12.2.0
gnuplot	6.0.0-gcc-12.2.0	6.0.0-gcc-12.2.0
groff	1.22.4-gcc-12.2.0	1.22.4-gcc-12.2.0
gromacs	2024.1-gcc-12.2.0	2024.1-gcc-12.2.0
gromacs-gpu	2024.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0	2024.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0
gromacs-mpi	2024.1-openmpi-5.0.3-gcc-12.2.0	2024.1-openmpi-5.0.3-gcc-12.2.0
gsl	2.7.1-gcc-12.2.0	2.7.1-gcc-12.2.0
gulp	6.2	6.2
hdf5	1.14.3-openmpi-5.0.3-gcc-12.2.0	1.14.3-openmpi-5.0.3-gcc-12.2.0
hmmer	3.4-openmpi-5.0.3-gcc-12.2.0	3.4-openmpi-5.0.3-gcc-12.2.0
htop	3.2.2-gcc-12.2.0	3.2.2-gcc-12.2.0
htslib	1.19.1-gcc-12.2.0	1.19.1-gcc-12.2.0
hyphy	2.5.51hf-gcc-12.2.0	2.5.51hf-gcc-12.2.0
igv	2.16.2-gcc-12.2.0	2.16.2-gcc-12.2.0
imagemagick	7.1.1-29-gcc-12.2.0	7.1.1-29-gcc-12.2.0
intel	2023.2.4, 2024.1.0	2024.1.0
intel-classic	2021.10.0	2021.10.0
intel-mkl	2024.1.0	2024.1.0
intel-mpi	2021.12.1	2021.12.1
intel-tbb	2021.9.0-gcc-12.2.0	2021.9.0-gcc-12.2.0
jags	4.3.2-gcc-12.2.0	4.3.2-gcc-12.2.0
jellyfish	2.2.7-gcc-12.2.0	2.2.7-gcc-12.2.0
julia	1.10.4	1.10.4
kraken2	2.1.2-gcc-12.2.0	2.1.2-gcc-12.2.0
lammps	20230802.3-openmpi-5.0.3-gcc-12.2.0	20230802.3-openmpi-5.0.3-gcc-12.2.0
lammps-gpu	20230802.3-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0	20230802.3-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0
libpng	1.6.39-gcc-12.2.0	1.6.39-gcc-12.2.0
libsodium	1.0.18-gcc-12.2.0	1.0.18-gcc-12.2.0
libtiff	4.5.1-gcc-12.2.0	4.5.1-gcc-12.2.0
lua	5.4.6-gcc-12.2.0	5.4.6-gcc-12.2.0
mafft	7.505-gcc-12.2.0	7.505-gcc-12.2.0
maker	2.31.10, 3.01.03	2.31.10
maple	2023	2023
masurca	4.1.0-gcc-12.2.0	4.1.0-gcc-12.2.0
mathematica	13.2.1	13.2.1
matlab	2022a, 2023a, 2024a	2024a
mcl	14-137-gcc-12.2.0	14-137-gcc-12.2.0
meshlab	2023.12	2023.12
miniforge	24.7.1	24.7.1
minimap2	2.28-gcc-12.2.0	2.28-gcc-12.2.0
mono	6.12.0.122-gcc-12.2.0	6.12.0.122-gcc-12.2.0
motioncor2	1.6.4-cuda-11.8.0-gcc-12.2.0	1.6.4-cuda-11.8.0-gcc-12.2.0
mrbayes	3.2.7a-openmpi-5.0.3-gcc-12.2.0	3.2.7a-openmpi-5.0.3-gcc-12.2.0
muscle	3.8.1551-gcc-12.2.0	3.8.1551-gcc-12.2.0
mysql	8.0.35-gcc-12.2.0	8.0.35-gcc-12.2.0
nano	7.2-gcc-12.2.0	7.2-gcc-12.2.0
netlib-lapack	3.11.0-gcc-12.2.0	3.11.0-gcc-12.2.0
netlib-scalapack	2.2.0-openmpi-5.0.3-gcc-12.2.0	2.2.0-openmpi-5.0.3-gcc-12.2.0
nextflow	23.10.1-gcc-12.2.0	23.10.1-gcc-12.2.0
nvidia-hpc-sdk	24.5	24.5
nvtools	2.0.0	2.0.0
openbabel	3.1.1-gcc-12.2.0	3.1.1-gcc-12.2.0
openfoam	2312-openmpi-5.0.3-gcc-12.2.0	2312-openmpi-5.0.3-gcc-12.2.0
openfoam-org	10-openmpi-5.0.3-gcc-12.2.0	10-openmpi-5.0.3-gcc-12.2.0
openjdk	1.8.0_265-b01-gcc-12.2.0, 17.0.8.1_1-gcc-12.2.0, 21.0.0_35-gcc-12.2.0	21.0.0_35-gcc-12.2.0
openmolcas	23.06-openmpi-5.0.3-gcc-12.2.0	23.06-openmpi-5.0.3-gcc-12.2.0
openmpi	5.0.3-gcc-12.2.0	5.0.3-gcc-12.2.0
openssl	3.3.0-gcc-12.2.0	3.3.0-gcc-12.2.0
orca	5.0.4, 6.0.0	5.0.4
paml	4.10.7-gcc-12.2.0	4.10.7-gcc-12.2.0
pandoc	3.5	3.5
papi	7.1.0-gcc-12.2.0	7.1.0-gcc-12.2.0
parallel	20220522-gcc-12.2.0	20220522-gcc-12.2.0
paraview	5.12.0-openmpi-5.0.3-gcc-12.2.0	5.12.0-openmpi-5.0.3-gcc-12.2.0
pdftotext	21.01.0	21.01.0
perl	5.38.0-gcc-12.2.0	5.38.0-gcc-12.2.0
phonemizer	3.2.1	3.2.1
phylobayesmpi	1.8b-openmpi-5.0.3-gcc-12.2.0	1.8b-openmpi-5.0.3-gcc-12.2.0
pigz	2.8-gcc-12.2.0	2.8-gcc-12.2.0
plink	1.9-beta6.27-gcc-12.2.0, 2.00a6LM	2.00a6LM
plumed	2.9.0-openmpi-5.0.3-gcc-12.2.0	2.9.0-openmpi-5.0.3-gcc-12.2.0
postgresql	15.2-gcc-12.2.0	15.2-gcc-12.2.0
prank	170427-gcc-12.2.0	170427-gcc-12.2.0
primer3	2.6.1-gcc-12.2.0	2.6.1-gcc-12.2.0
proj	9.2.1-gcc-12.2.0	9.2.1-gcc-12.2.0
protobuf	3.21.12-gcc-12.2.0	3.21.12-gcc-12.2.0
python	3.8.5-gcc-12.2.0, 3.11.7-gcc-12.2.0, 3.12.1-gcc-12.2.0	3.11.7-gcc-12.2.0
qctool	2.2.0-gcc-12.2.0	2.2.0-gcc-12.2.0
qt	5.15.12-gcc-12.2.0	5.15.12-gcc-12.2.0
qualimap	2.2.1-gcc-12.2.0	2.2.1-gcc-12.2.0
R	4.4.1	4.4.1
raxml	8.2.12-openmpi-5.0.3-gcc-12.2.0	8.2.12-openmpi-5.0.3-gcc-12.2.0
raxml-ng	1.1.0-gcc-12.2.0	1.1.0-gcc-12.2.0
raxml-ng-mpi	1.1.0-openmpi-5.0.3-gcc-12.2.0	1.1.0-openmpi-5.0.3-gcc-12.2.0
rclone	1.65.1-gcc-12.2.0	1.65.1-gcc-12.2.0
relion	4.0.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0, 5.0.0	4.0.1-openmpi-5.0.3-cuda-12.4.0-gcc-12.2.0
ruby	3.3.0-gcc-12.2.0	3.3.0-gcc-12.2.0
salmon	1.10.2-gcc-12.2.0	1.10.2-gcc-12.2.0
samtools	1.19.2-gcc-12.2.0	1.19.2-gcc-12.2.0
satsuma2	2021-03-04-gcc-12.2.0	2021-03-04-gcc-12.2.0
seqtk	1.4-gcc-12.2.0	1.4-gcc-12.2.0
shapeit4	4.2.2-gcc-12.2.0	4.2.2-gcc-12.2.0
shapeit5	5.1.1	5.1.1
spaceranger	3.1.0, 3.1.2	3.1.2
spack	0.22.0	0.22.0
spades	3.15.5-gcc-12.2.0	3.15.5-gcc-12.2.0
sparsehash	2.0.4-gcc-12.2.0	2.0.4-gcc-12.2.0
spglib	2.3.1-gcc-12.2.0	2.3.1-gcc-12.2.0
sqlite	3.43.2-gcc-12.2.0	3.43.2-gcc-12.2.0
sra-tools	3.0.3-gcc-12.2.0	3.0.3-gcc-12.2.0
star	2.7.11a-gcc-12.2.0	2.7.11a-gcc-12.2.0
starccm	2302, 2402, 2406	2406
stata	18	18
subread	2.0.6-gcc-12.2.0	2.0.6-gcc-12.2.0
swig	4.1.1-gcc-12.2.0	4.1.1-gcc-12.2.0
texinfo	7.0.3-gcc-12.2.0	7.0.3-gcc-12.2.0
tmux	3.4-gcc-12.2.0	3.4-gcc-12.2.0
transdecoder	5.7.1-gcc-12.2.0	5.7.1-gcc-12.2.0
trimgalore	0.6.10-gcc-12.2.0	0.6.10-gcc-12.2.0
trimmomatic	0.39-gcc-12.2.0	0.39-gcc-12.2.0
udunits	2.2.28-gcc-12.2.0	2.2.28-gcc-12.2.0
valgrind	3.20.0-openmpi-5.0.3-gcc-12.2.0	3.20.0-openmpi-5.0.3-gcc-12.2.0
vasp	6.4.2, 6.4.3	6.4.3
vasp-gpu	6.4.2, 6.4.3	6.4.3
vcftools	0.1.16-gcc-12.2.0	0.1.16-gcc-12.2.0
vmd	1.9.3-gcc-12.2.0	1.9.3-gcc-12.2.0
vulkansdk	1.3.283.0	1.3.283.0
wtdbg2	2.3-gcc-12.2.0	2.3-gcc-12.2.0
yasm	1.3.0-gcc-12.2.0	1.3.0-gcc-12.2.0
zsh	5.8-gcc-12.2.0	5.8-gcc-12.2.0
zstd	1.5.6-gcc-12.2.0	1.5.6-gcc-12.2.0